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Comments on “The anatomy of successful computational biology software”
Hi, just a few comments from this note http://www.nature.com/nbt/journal/v31/n10/full/nbt.2721.html, Firstly, I think that for a tool to have a big success, it should: * Initial user base * Vacuum in...
View ArticleMore comments on Bioinformatics Software Development
I just found these comments from this Nature Editorial. Their secret sauce appears to boil down to five ingredients: developers must possess sufficient proximity to and understanding of the research...
View ArticleI have one problem…
– I have one problem. – Let’s use XML and Perl – Now I have three problems! Let’s use Java instead! Now you have a ProblemFactory problemFactory = new ProblemFactory(ProblemFactory.PROBLEM_FACTORY);...
View ArticleBuilding MongoDB with clang and libc++
I am working in a project that I use MongoDB as data storage system. I really like to “trunk” version, directly from git [https://github.com/mongodb/mongo]. Even using a Mac, I used to compile MongoDB...
View ArticleBuilding mongodb with custom boost library using linux. Client C++ driver too...
In fact it is much more a memory for myself than some tutorial. But as I have not found any (actual) reference of it. By the way, I tested during 2.5.x development cicle. Probably it can change. (And...
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So you want to be a computational biologist?
Nice review that I found in Nature: http://www.nature.com/nbt/journal/v31/n11/full/nbt.2740.html A very important point: You’re a scientist, not a programmer The perfect is the enemy of the good....
View ArticleBig data hype in bioinformatics
Big data hype in bioinformatics “So in practice, our grants will be filled with mentions of Big Data, Web 3.0, “thinking outside the box”, value added, hype/innovation, but in reality biomedical...
View ArticleBoost + clang.503 (Apple LLVM version 5.1)
For whom that updated the XCode to version 5.1 and are having problems building boost libraries, check this patch: https://github.com/boostorg/atomic/commit/6bb71fdd8f7cc346d90fb14beb38b7297fc1ffd9
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